IL_4V4J_132
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 4V4J|1|y|A|532, 4V4J|1|y|U|534, 4V4J|1|y|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4J_132 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.3933
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V4J|1|y|G|515
4V4J|1|y|PSU|516
4V4J|1|y|G|517
4V4J|1|y|C|518
4V4J|1|y|C|519
4V4J|1|y|A|520
4V4J|1|y|G|521
*
4V4J|1|y|C|528
4V4J|1|y|G|529
4V4J|1|y|G|530
4V4J|1|y|U|531
4V4J|1|y|A|532
4V4J|1|y|A|533
4V4J|1|y|U|534
4V4J|1|y|A|535
4V4J|1|y|C|536
Current chains
- Chain y
- 16S RNA
Nearby chains
- Chain 3
- MRNA
- Chain d
- 30S ribosomal protein S3
- Chain e
- 30S ribosomal protein S4
- Chain m
- 30S ribosomal protein S12
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