IL_4V4J_133

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

4V4J|1|y|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_133 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.3042

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

4V4J|1|y|C|569
4V4J|1|y|G|570
4V4J|1|y|U|571
4V4J|1|y|A|572
4V4J|1|y|A|573
4V4J|1|y|A|574
4V4J|1|y|G|575
*
4V4J|1|y|C|880
4V4J|1|y|G|881

Current chains

Chain y

16S RNA

Nearby chains

Chain m

30S ribosomal protein S12