IL_4V4J_137

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

UGAAAGAC*GGGGAG

Length

14 nucleotides

Bulged bases

4V4J|1|y|G|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_137 not in the Motif Atlas

Homologous match to IL_4LFB_026

Geometric discrepancy: 0.4083

The information below is about IL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04211.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4V4J|1|y|U|605
4V4J|1|y|G|606
4V4J|1|y|A|607
4V4J|1|y|A|608
4V4J|1|y|A|609
4V4J|1|y|G|610
4V4J|1|y|A|611
4V4J|1|y|C|612
*
4V4J|1|y|G|628
4V4J|1|y|G|629
4V4J|1|y|G|630
4V4J|1|y|G|631
4V4J|1|y|A|632
4V4J|1|y|G|633

Current chains

Chain y

16S RNA

Nearby chains

Chain e

30S ribosomal protein S4

Chain i

30S ribosomal protein S8

Chain q

30S ribosomal protein S16