IL_4V4J_143

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_143 not in the Motif Atlas

Homologous match to IL_6CZR_144

Geometric discrepancy: 0.231

The information below is about IL_6CZR_144

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

4V4J|1|y|G|774
4V4J|1|y|G|775
4V4J|1|y|G|776
4V4J|1|y|A|777
4V4J|1|y|G|778
*
4V4J|1|y|U|804
4V4J|1|y|C|805

Current chains

Chain y

16S RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain l

30S ribosomal protein S11

Chain w

Large subunit ribosomal RNA; LSU rRNA