IL_4V4J_150

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_150 not in the Motif Atlas

Geometric match to IL_6CZR_151

Geometric discrepancy: 0.3539

The information below is about IL_6CZR_151

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

4V4J|1|y|G|993
4V4J|1|y|A|994
4V4J|1|y|C|995
4V4J|1|y|A|996
4V4J|1|y|U|997
*
4V4J|1|y|A|1044
4V4J|1|y|C|1045

Current chains

Chain y

16S RNA

Nearby chains

Chain o

30S ribosomal protein S14 type Z