IL_4V4J_156

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_156 not in the Motif Atlas

Homologous match to IL_6CZR_158

Geometric discrepancy: 0.4786

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

4V4J|1|y|G|1124
4V4J|1|y|U|1125
4V4J|1|y|U|1126
4V4J|1|y|G|1127
*
4V4J|1|y|C|1145
4V4J|1|y|A|1146
4V4J|1|y|C|1147
4V4J|1|y|U|1148
4V4J|1|y|C|1149

Current chains

Chain y

16S RNA

Nearby chains

Chain j

30S ribosomal protein S9

Chain k

30S ribosomal protein S10