IL_4V4J_157

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_157 not in the Motif Atlas

Homologous match to IL_4LFB_049

Geometric discrepancy: 0.5226

The information below is about IL_4LFB_049

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

4V4J|1|y|C|1129
4V4J|1|y|A|1130
4V4J|1|y|G|1131
4V4J|1|y|C|1132
*
4V4J|1|y|G|1142
4V4J|1|y|G|1143

Current chains

Chain y

16S RNA

Nearby chains

Chain j

30S ribosomal protein S9

Chain k

30S ribosomal protein S10