IL_4V4J_158

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_158 not in the Motif Atlas

Homologous match to IL_4LFB_050

Geometric discrepancy: 0.3163

The information below is about IL_4LFB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4V4J|1|y|C|1158
4V4J|1|y|U|1159
4V4J|1|y|G|1160
4V4J|1|y|C|1161
*
4V4J|1|y|G|1175
4V4J|1|y|A|1176
4V4J|1|y|G|1177
4V4J|1|y|G|1178
4V4J|1|y|A|1179
4V4J|1|y|A|1180
4V4J|1|y|G|1181

Current chains

Chain y

16S RNA

Nearby chains

Chain c

30S ribosomal protein S2

Chain j

30S ribosomal protein S9