IL_4V4J_163

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

4V4J|1|y|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_163 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.5723

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

4V4J|1|y|C|1399
4V4J|1|y|5MC|1400
4V4J|1|y|G|1401
*
4V4J|1|y|C|1501
4V4J|1|y|A|1502
4V4J|1|y|A|1503
4V4J|1|y|G|1504

Current chains

Chain y

16S RNA

Nearby chains

Chain 3

MRNA

Chain z

Transfer RNA; tRNA