IL_4V4J_166

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_166 not in the Motif Atlas

Homologous match to IL_6CZR_169

Geometric discrepancy: 0.2452

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

4V4J|1|y|G|1416
4V4J|1|y|G|1417
4V4J|1|y|A|1418
4V4J|1|y|G|1419
*
4V4J|1|y|U|1481
4V4J|1|y|G|1482
4V4J|1|y|A|1483
4V4J|1|y|C|1484

Current chains

Chain y

16S RNA

Nearby chains

Chain I

50S ribosomal protein L14

Chain w

Large subunit ribosomal RNA; LSU rRNA