IL_4V4J_169

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

4V4J|1|y|G|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_169 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.388

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49061.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

6

Unit IDs

4V4J|1|y|C|1440
4V4J|1|y|G|1441
4V4J|1|y|G|1442
4V4J|1|y|G|1443
4V4J|1|y|A|1446
4V4J|1|y|G|1447
*
4V4J|1|y|C|1459
4V4J|1|y|A|1460
4V4J|1|y|G|1461

Current chains

Chain y

16S RNA

Nearby chains

Chain N

50S ribosomal protein L19

Chain u

30S ribosomal protein S20

Chain w

Large subunit ribosomal RNA; LSU rRNA