IL_4V4J_172

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GGA*UAACC

Length

8 nucleotides

Bulged bases

4V4J|1|w|G|776, 4V4J|1|w|A|788, 4V4J|1|w|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_172 not in the Motif Atlas

Geometric match to IL_8VTW_022

Geometric discrepancy: 0.237

The information below is about IL_8VTW_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

4V4J|1|w|G|775
4V4J|1|w|G|776
4V4J|1|w|A|777
*
4V4J|1|w|U|787
4V4J|1|w|A|788
4V4J|1|w|A|789
4V4J|1|w|C|790
4V4J|1|w|C|791

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain Q

50S ribosomal protein L22

Chain Z

50S ribosomal protein L34