IL_4V4J_174

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

4V4J|1|w|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_174 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.4415

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

4V4J|1|w|G|1059
4V4J|1|w|U|1060
4V4J|1|w|U|1061
4V4J|1|w|G|1062
*
4V4J|1|w|C|1076
4V4J|1|w|A|1077
4V4J|1|w|U|1078
4V4J|1|w|C|1079

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains