IL_4V4J_177

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CU*AUAAG

Length

7 nucleotides

Bulged bases

4V4J|1|w|A|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_177 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.2321

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

4V4J|1|w|C|2695
4V4J|1|w|U|2696
*
4V4J|1|w|A|2711
4V4J|1|w|U|2712
4V4J|1|w|A|2712|||B
4V4J|1|w|A|2713
4V4J|1|w|G|2714

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain L

50S ribosomal protein L17

Chain N

50S ribosomal protein L19