IL_4V4J_181
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- GGAAGAAG*UGUAAAC
- Length
- 15 nucleotides
- Bulged bases
- 4V4J|1|y|A|412
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4J_181 not in the Motif Atlas
- Homologous match to IL_6CZR_359
- Geometric discrepancy: 0.2741
- The information below is about IL_6CZR_359
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28026.2
- Basepair signature
- cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V4J|1|y|G|409
4V4J|1|y|G|410
4V4J|1|y|A|411
4V4J|1|y|A|412
4V4J|1|y|G|413
4V4J|1|y|A|414
4V4J|1|y|A|415
4V4J|1|y|G|416
*
4V4J|1|y|U|427
4V4J|1|y|G|428
4V4J|1|y|U|429
4V4J|1|y|A|430
4V4J|1|y|A|431
4V4J|1|y|A|432
4V4J|1|y|C|433
Current chains
- Chain y
- 16S RNA
Nearby chains
- Chain e
- 30S ribosomal protein S4
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