IL_4V4J_185

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

4V4J|1|y|C|1200, 4V4J|1|y|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_185 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.2718

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4V4J|1|y|G|1057
4V4J|1|y|G|1058
*
4V4J|1|y|U|1199
4V4J|1|y|C|1200
4V4J|1|y|A|1201
4V4J|1|y|G|1202
4V4J|1|y|C|1203

Current chains

Chain y

16S RNA

Nearby chains

Chain d

30S ribosomal protein S3

Chain k

30S ribosomal protein S10

Chain o

30S ribosomal protein S14 type Z