IL_4V4J_188
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- (5MC)AC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4J_188 not in the Motif Atlas
- Homologous match to IL_4LFB_070
- Geometric discrepancy: 0.3595
- The information below is about IL_4LFB_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31531.3
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 13
Unit IDs
4V4J|1|y|5MC|1407
4V4J|1|y|A|1408
4V4J|1|y|C|1409
*
4V4J|1|y|G|1491
4V4J|1|y|A|1492
4V4J|1|y|A|1493
4V4J|1|y|G|1494
Current chains
- Chain y
- 16S RNA
Nearby chains
- Chain 3
- MRNA
- Chain m
- 30S ribosomal protein S12
- Chain n
- 30S ribosomal protein S13
- Chain w
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: