IL_4V4P_007
3D structure
- PDB id
- 4V4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of 70S ribosome with thrS operator and tRNAs.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.5 Å
Loop
- Sequence
- UGAGUAGC*GCGAAAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4P_007 not in the Motif Atlas
- Geometric match to IL_4V9F_012
- Geometric discrepancy: 0.3751
- The information below is about IL_4V9F_012
- Detailed Annotation
- 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_59724.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V4P|1|AA|U|239
4V4P|1|AA|G|240
4V4P|1|AA|A|241
4V4P|1|AA|G|242
4V4P|1|AA|U|243
4V4P|1|AA|A|244
4V4P|1|AA|G|245
4V4P|1|AA|C|246
*
4V4P|1|AA|G|252
4V4P|1|AA|C|253
4V4P|1|AA|G|254
4V4P|1|AA|A|255
4V4P|1|AA|A|256
4V4P|1|AA|A|257
4V4P|1|AA|G|258
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain A4
- 50S ribosomal protein L31
- Chain A8
- 50S ribosomal protein L35
- Chain AO
- 50S ribosomal protein L15
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