IL_4V4P_014

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GCC*GAGC

Length

7 nucleotides

Bulged bases

4V4P|1|AA|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4P_014 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.2437

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4V4P|1|AA|G|696
4V4P|1|AA|C|697
4V4P|1|AA|C|698
*
4V4P|1|AA|G|763
4V4P|1|AA|A|764
4V4P|1|AA|G|765
4V4P|1|AA|C|766

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A7

50S ribosomal protein L34

Chain AD

50S ribosomal protein L2