IL_4V4P_016

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

UGAAGC*GUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4P_016 not in the Motif Atlas

Homologous match to IL_7A0S_018

Geometric discrepancy: 0.2284

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V4P|1|AA|U|703
4V4P|1|AA|G|704
4V4P|1|AA|A|705
4V4P|1|AA|A|706
4V4P|1|AA|G|707
4V4P|1|AA|C|708
*
4V4P|1|AA|G|723
4V4P|1|AA|U|724
4V4P|1|AA|G|725
4V4P|1|AA|G|726
4V4P|1|AA|A|727
4V4P|1|AA|G|728

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2