IL_4V4P_063

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4V4P|1|AA|G|2112, 4V4P|1|AA|U|2113, 4V4P|1|AA|A|2114, 4V4P|1|AA|G|2115, 4V4P|1|AA|G|2116, 4V4P|1|AA|U|2118, 4V4P|1|AA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4P_063 not in the Motif Atlas

Geometric match to IL_3IGI_013

Geometric discrepancy: 0.2766

The information below is about IL_3IGI_013

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

4V4P|1|AA|G|2110
4V4P|1|AA|C|2111
4V4P|1|AA|G|2112
4V4P|1|AA|U|2113
4V4P|1|AA|A|2114
4V4P|1|AA|G|2115
4V4P|1|AA|G|2116
4V4P|1|AA|A|2117
4V4P|1|AA|U|2118
4V4P|1|AA|A|2119
4V4P|1|AA|G|2120
*
4V4P|1|AA|C|2178
4V4P|1|AA|C|2179

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L1