IL_4V4P_074

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

4V4P|1|AA|G|2777, 4V4P|1|AA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4P_074 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.2585

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4V4P|1|AA|U|2636
4V4P|1|AA|U|2637
4V4P|1|AA|G|2638
4V4P|1|AA|A|2639
4V4P|1|AA|G|2640
*
4V4P|1|AA|C|2774
4V4P|1|AA|A|2775
4V4P|1|AA|A|2776
4V4P|1|AA|G|2777
4V4P|1|AA|A|2778
4V4P|1|AA|U|2779
4V4P|1|AA|G|2780
4V4P|1|AA|A|2781
4V4P|1|AA|G|2782

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AM

50S ribosomal protein L13