IL_4V4P_092

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

4V4P|1|BA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4P_092 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.1779

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V4P|1|BA|G|148
4V4P|1|BA|A|149
4V4P|1|BA|C|150
4V4P|1|BA|A|151
4V4P|1|BA|A|152
4V4P|1|BA|C|153
*
4V4P|1|BA|G|168
4V4P|1|BA|C|169
4V4P|1|BA|U|170
4V4P|1|BA|A|171
4V4P|1|BA|A|172
4V4P|1|BA|U|173
4V4P|1|BA|C|174

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BW

30S ribosomal protein S20