IL_4V4P_094

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4V4P|1|BA|U|244, 4V4P|1|BA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4P_094 not in the Motif Atlas

Homologous match to IL_6CZR_123

Geometric discrepancy: 0.2399

The information below is about IL_6CZR_123

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.2

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

4V4P|1|BA|C|242
4V4P|1|BA|A|243
4V4P|1|BA|U|244
4V4P|1|BA|C|245
4V4P|1|BA|A|246
4V4P|1|BA|G|247
*
4V4P|1|BA|C|277
4V4P|1|BA|G|278
4V4P|1|BA|A|279
4V4P|1|BA|C|280
4V4P|1|BA|G|281
4V4P|1|BA|A|282
4V4P|1|BA|C|283
4V4P|1|BA|G|284

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BO

30S ribosomal protein S12

Chain BT

30S ribosomal protein S17