IL_4V4P_102

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4P_102 not in the Motif Atlas

Homologous match to IL_6CZR_406

Geometric discrepancy: 0.27

The information below is about IL_6CZR_406

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_26564.1

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V4P|1|BA|G|450
4V4P|1|BA|A|451
4V4P|1|BA|A|452
4V4P|1|BA|A|453
4V4P|1|BA|C|454
4V4P|1|BA|C|455
*
4V4P|1|BA|G|477
4V4P|1|BA|A|478
4V4P|1|BA|C|479
4V4P|1|BA|U|480
4V4P|1|BA|G|481
4V4P|1|BA|A|482
4V4P|1|BA|C|483

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BS

30S ribosomal protein S16