IL_4V4P_111
3D structure
- PDB id
- 4V4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of 70S ribosome with thrS operator and tRNAs.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.5 Å
Loop
- Sequence
- GAGAG*UGGU
- Length
- 9 nucleotides
- Bulged bases
- 4V4P|1|BA|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4P_111 not in the Motif Atlas
- Homologous match to IL_4LFB_029
- Geometric discrepancy: 0.1705
- The information below is about IL_4LFB_029
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
4V4P|1|BA|G|662
4V4P|1|BA|A|663
4V4P|1|BA|G|664
4V4P|1|BA|A|665
4V4P|1|BA|G|666
*
4V4P|1|BA|U|740
4V4P|1|BA|G|741
4V4P|1|BA|G|742
4V4P|1|BA|U|743
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BI
- 30S ribosomal protein S6
- Chain BR
- 30S ribosomal protein S15
- Chain BU
- 30S ribosomal protein S18
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