IL_4V4P_126

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4P_126 not in the Motif Atlas

Homologous match to IL_4LFB_047

Geometric discrepancy: 0.2112

The information below is about IL_4LFB_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

4V4P|1|BA|G|1061
4V4P|1|BA|U|1062
4V4P|1|BA|C|1063
*
4V4P|1|BA|G|1193
4V4P|1|BA|U|1194
4V4P|1|BA|C|1195

Current chains

Chain BA

16S rRNA

Nearby chains

Chain B1

thrS mRNA operator

Chain BF

30S ribosomal protein S3

Chain BH

30S ribosomal protein S5

Chain BL

30S ribosomal protein S9

Chain BM

30S ribosomal protein S10

Chain BQ

30S ribosomal protein S14