IL_4V4P_136

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CCGAAG*CGAGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4P_136 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3561

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V4P|1|BA|C|1430
4V4P|1|BA|C|1431
4V4P|1|BA|G|1432
4V4P|1|BA|A|1433
4V4P|1|BA|A|1434
4V4P|1|BA|G|1435
*
4V4P|1|BA|C|1466
4V4P|1|BA|G|1467
4V4P|1|BA|A|1468
4V4P|1|BA|G|1469
4V4P|1|BA|G|1470

Current chains

Chain BA

16S rRNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AR

50S ribosomal protein L19

Chain BW

30S ribosomal protein S20