IL_4V4P_162

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CGUGG*CCCG

Length

9 nucleotides

Bulged bases

4V4P|1|AA|U|2068

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4P_162 not in the Motif Atlas

Geometric match to IL_4EYA_008

Geometric discrepancy: 0.2902

The information below is about IL_4EYA_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

4V4P|1|AA|C|2066
4V4P|1|AA|G|2067
4V4P|1|AA|U|2068
4V4P|1|AA|G|2069
4V4P|1|AA|G|2070
*
4V4P|1|AA|C|2441
4V4P|1|AA|C|2442
4V4P|1|AA|C|2443
4V4P|1|AA|G|2444

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4