IL_4V4P_172

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CGGG*UUG

Length

7 nucleotides

Bulged bases

4V4P|1|BA|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4P_172 not in the Motif Atlas

Geometric match to IL_7MDL_001

Geometric discrepancy: 0.2715

The information below is about IL_7MDL_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_08069.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

4V4P|1|BA|C|924
4V4P|1|BA|G|925
4V4P|1|BA|G|926
4V4P|1|BA|G|927
*
4V4P|1|BA|U|1390
4V4P|1|BA|U|1391
4V4P|1|BA|G|1392

Current chains

Chain BA

16S rRNA

Nearby chains

Chain B1

thrS mRNA operator

Chain BH

30S ribosomal protein S5