IL_4V4P_185

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

4V4P|1|AA|U|2688, 4V4P|1|AA|U|2689, 4V4P|1|AA|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4P_185 not in the Motif Atlas

Homologous match to IL_9DFE_104

Geometric discrepancy: 0.3629

The information below is about IL_9DFE_104

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

4V4P|1|AA|U|2687
4V4P|1|AA|U|2688
4V4P|1|AA|U|2689
4V4P|1|AA|C|2690
4V4P|1|AA|C|2691
*
4V4P|1|AA|G|2718
4V4P|1|AA|G|2719
4V4P|1|AA|U|2720
4V4P|1|AA|A|2721
4V4P|1|AA|G|2722

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A0

50S ribosomal protein L17

Chain AE

50S ribosomal protein L3

Chain AR

50S ribosomal protein L19