IL_4V4Q_038

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

4V4Q|1|AA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Q_038 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1111

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

4V4Q|1|AA|U|684
4V4Q|1|AA|G|685
4V4Q|1|AA|U|686
4V4Q|1|AA|A|687
4V4Q|1|AA|G|688
*
4V4Q|1|AA|C|699
4V4Q|1|AA|G|700
4V4Q|1|AA|U|701
4V4Q|1|AA|A|702
4V4Q|1|AA|G|703
4V4Q|1|AA|A|704
4V4Q|1|AA|G|705
4V4Q|1|AA|A|706

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain BB

Large subunit ribosomal RNA; LSU rRNA