3D structure

PDB id
4V4S (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the whole ribosomal complex.
Experimental method
X-RAY DIFFRACTION
Resolution
6.76 Å

Loop

Sequence
GGAGUACG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4S_033 not in the Motif Atlas
Homologous match to IL_5J7L_038
Geometric discrepancy: 0.1884
The information below is about IL_5J7L_038
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

4V4S|1|AA|G|887
4V4S|1|AA|G|888
4V4S|1|AA|A|889
4V4S|1|AA|G|890
4V4S|1|AA|U|891
4V4S|1|AA|A|892
4V4S|1|AA|C|893
4V4S|1|AA|G|894
*
4V4S|1|AA|U|905
4V4S|1|AA|G|906
4V4S|1|AA|A|907
4V4S|1|AA|A|908
4V4S|1|AA|A|909
4V4S|1|AA|C|910

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AL
30S ribosomal protein S12
Chain AQ
30S ribosomal protein S17

Coloring options:


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