IL_4V4S_033

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4S_033 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.1884

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V4S|1|AA|G|887
4V4S|1|AA|G|888
4V4S|1|AA|A|889
4V4S|1|AA|G|890
4V4S|1|AA|U|891
4V4S|1|AA|A|892
4V4S|1|AA|C|893
4V4S|1|AA|G|894
*
4V4S|1|AA|U|905
4V4S|1|AA|G|906
4V4S|1|AA|A|907
4V4S|1|AA|A|908
4V4S|1|AA|A|909
4V4S|1|AA|C|910

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17