IL_4V4S_082

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

CGCCA*UGCG

Length

9 nucleotides

Bulged bases

4V4S|1|BA|C|994, 4V4S|1|BA|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4S_082 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.3921

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V4S|1|BA|C|992
4V4S|1|BA|G|993
4V4S|1|BA|C|994
4V4S|1|BA|C|995
4V4S|1|BA|A|996
*
4V4S|1|BA|U|1159
4V4S|1|BA|G|1160
4V4S|1|BA|C|1161
4V4S|1|BA|G|1162

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L30

Chain BU

50S ribosomal protein L20

Chain BV

50S ribosomal protein L21