IL_4V4S_093

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

GAC*GGC

Length

6 nucleotides

Bulged bases

4V4S|1|BA|A|1220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4S_093 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.3689

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V4S|1|BA|G|1219
4V4S|1|BA|A|1220
4V4S|1|BA|C|1221
*
4V4S|1|BA|G|1228
4V4S|1|BA|G|1229
4V4S|1|BA|C|1230

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BU

50S ribosomal protein L20

Chain BV

50S ribosomal protein L21