IL_4V4S_115

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

CGUG*CCG

Length

7 nucleotides

Bulged bases

4V4S|1|BA|U|2068

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4S_115 not in the Motif Atlas

Geometric match to IL_353D_001

Geometric discrepancy: 0.2397

The information below is about IL_353D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V4S|1|BA|C|2066
4V4S|1|BA|G|2067
4V4S|1|BA|U|2068
4V4S|1|BA|G|2069
*
4V4S|1|BA|C|2442
4V4S|1|BA|C|2443
4V4S|1|BA|G|2444

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4