IL_4V4S_138

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4S_138 not in the Motif Atlas

Geometric match to IL_1U9S_005

Geometric discrepancy: 0.3721

The information below is about IL_1U9S_005

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4V4S|1|BB|C|30
4V4S|1|BB|C|31
*
4V4S|1|BB|G|51
4V4S|1|BB|A|52
4V4S|1|BB|A|53
4V4S|1|BB|G|54

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain BG

50S ribosomal protein L5

Chain BS

50S ribosomal protein L18