IL_4V4S_141

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

GCGUG*CGACGC

Length

11 nucleotides

Bulged bases

4V4S|1|AA|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4S_141 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3188

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V4S|1|AA|G|42
4V4S|1|AA|C|43
4V4S|1|AA|G|44
4V4S|1|AA|U|45
4V4S|1|AA|G|46
*
4V4S|1|AA|C|395
4V4S|1|AA|G|396
4V4S|1|AA|A|397
4V4S|1|AA|C|398
4V4S|1|AA|G|399
4V4S|1|AA|C|400

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AP

30S ribosomal protein S16