IL_4V4T_048

3D structure

PDB id

4V4T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex with a stop codon in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

6.46 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4T_048 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1892

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V4T|1|AA|C|1303
4V4T|1|AA|G|1304
4V4T|1|AA|G|1305
4V4T|1|AA|A|1306
4V4T|1|AA|U|1307
4V4T|1|AA|U|1308
*
4V4T|1|AA|A|1329
4V4T|1|AA|U|1330
4V4T|1|AA|G|1331
4V4T|1|AA|A|1332
4V4T|1|AA|A|1333
4V4T|1|AA|G|1334

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AM

30S ribosomal protein S13

Chain AU

30S ribosomal protein Thx