IL_4V4V_018

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_018 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.478

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V4V|1|AA|G|450
4V4V|1|AA|A|451
4V4V|1|AA|A|452
4V4V|1|AA|G|453
4V4V|1|AA|G|454
4V4V|1|AA|G|455
*
4V4V|1|AA|C|477
4V4V|1|AA|A|478
4V4V|1|AA|U|479
4V4V|1|AA|U|480
4V4V|1|AA|G|481
4V4V|1|AA|A|482
4V4V|1|AA|C|483

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal subunit protein S16