3D structure

PDB id
4V4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
GGAGUACG*UAAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4V_031 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.0919
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

4V4V|1|AA|G|887
4V4V|1|AA|G|888
4V4V|1|AA|A|889
4V4V|1|AA|G|890
4V4V|1|AA|U|891
4V4V|1|AA|A|892
4V4V|1|AA|C|893
4V4V|1|AA|G|894
*
4V4V|1|AA|U|905
4V4V|1|AA|A|906
4V4V|1|AA|A|907
4V4V|1|AA|A|908
4V4V|1|AA|A|909
4V4V|1|AA|C|910

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AL
30S ribosomal subunit protein S12

Coloring options:


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