IL_4V4V_034

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_034 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.1915

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

4V4V|1|AA|G|953
4V4V|1|AA|G|954
*
4V4V|1|AA|C|1226
4V4V|1|AA|A|1227
4V4V|1|AA|C|1228

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AM

30S ribosomal subunit protein S13

Chain AS

30S ribosomal subunit protein S19

Chain AU

Transfer RNA; tRNA

Chain AV

Transfer RNA; tRNA