IL_4V4V_057

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GUAAG*CGUUUAAC

Length

13 nucleotides

Bulged bases

4V4V|1|B0|U|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_057 not in the Motif Atlas

Homologous match to IL_4WF9_004

Geometric discrepancy: 0.3251

The information below is about IL_4WF9_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

4V4V|1|B0|G|81
4V4V|1|B0|U|82
4V4V|1|B0|A|83
4V4V|1|B0|A|84
4V4V|1|B0|G|85
*
4V4V|1|B0|C|97
4V4V|1|B0|G|98
4V4V|1|B0|U|99
4V4V|1|B0|U|100
4V4V|1|B0|U|102
4V4V|1|B0|A|103
4V4V|1|B0|A|104
4V4V|1|B0|C|105

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L24

Chain BW

50S ribosomal protein L29