IL_4V4V_059

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_059 not in the Motif Atlas

Geometric match to IL_7A0S_006

Geometric discrepancy: 0.1433

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V4V|1|B0|G|188
4V4V|1|B0|G|189
4V4V|1|B0|A|190
4V4V|1|B0|A|191
4V4V|1|B0|C|192
4V4V|1|B0|U|193
4V4V|1|B0|G|194
*
4V4V|1|B0|C|201
4V4V|1|B0|U|202
4V4V|1|B0|A|203
4V4V|1|B0|A|204
4V4V|1|B0|G|205
4V4V|1|B0|U|206
4V4V|1|B0|A|207
4V4V|1|B0|C|208

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L4

Chain BJ

50S ribosomal protein L15