IL_4V4V_071

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GA*UGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_071 not in the Motif Atlas

Geometric match to IL_4V9F_034

Geometric discrepancy: 0.1531

The information below is about IL_4V9F_034

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

4V4V|1|B0|G|862
4V4V|1|B0|A|863
*
4V4V|1|B0|U|913
4V4V|1|B0|G|914
4V4V|1|B0|C|915

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain B9

5S ribosomal RNA; 5S rRNA

Chain BK

50S ribosomal protein L16

Chain BU

50S ribosomal protein L27