IL_4V4V_075

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GCUAAG*CGAAGC

Length

12 nucleotides

Bulged bases

4V4V|1|B0|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_075 not in the Motif Atlas

Geometric match to IL_4WF9_104

Geometric discrepancy: 0.2341

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V4V|1|B0|G|997
4V4V|1|B0|C|998
4V4V|1|B0|U|999
4V4V|1|B0|A|1000
4V4V|1|B0|A|1001
4V4V|1|B0|G|1002
*
4V4V|1|B0|C|1153
4V4V|1|B0|G|1154
4V4V|1|B0|A|1155
4V4V|1|B0|A|1156
4V4V|1|B0|G|1157
4V4V|1|B0|C|1158

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain B9

5S ribosomal RNA; 5S rRNA

Chain BO

50S RIBOSOMAL PROTEIN L20

Chain BX

50S ribosomal protein L30