IL_4V4V_087

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

4V4V|1|B0|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_087 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.2147

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

4V4V|1|B0|C|1319
4V4V|1|B0|C|1320
4V4V|1|B0|A|1321
4V4V|1|B0|A|1322
4V4V|1|B0|C|1323
*
4V4V|1|B0|G|1331
4V4V|1|B0|G|1332
4V4V|1|B0|G|1333

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L22