IL_4V4V_113

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_113 not in the Motif Atlas

Homologous match to IL_7RQB_096

Geometric discrepancy: 0.1483

The information below is about IL_7RQB_096

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_76223.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

4V4V|1|B0|C|2507
4V4V|1|B0|G|2508
*
4V4V|1|B0|U|2580
4V4V|1|B0|G|2581
4V4V|1|B0|G|2582

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AU

Transfer RNA; tRNA

Chain AV

Transfer RNA; tRNA