IL_4V4V_119
3D structure
- PDB id
- 4V4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4V_119 not in the Motif Atlas
- Geometric match to IL_4V9F_092
- Geometric discrepancy: 0.2764
- The information below is about IL_4V9F_092
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
4V4V|1|B0|C|2652
4V4V|1|B0|U|2653
4V4V|1|B0|A|2654
4V4V|1|B0|G|2655
4V4V|1|B0|U|2656
4V4V|1|B0|A|2657
4V4V|1|B0|C|2658
*
4V4V|1|B0|G|2663
4V4V|1|B0|G|2664
4V4V|1|B0|A|2665
4V4V|1|B0|C|2666
4V4V|1|B0|C|2667
4V4V|1|B0|G|2668
Current chains
- Chain B0
- 23S ribosomal RNA
Nearby chains
- Chain BE
- 50S ribosomal protein L6
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