IL_4V4V_126

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_126 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.3935

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V4V|1|B0|U|2847
4V4V|1|B0|G|2848
4V4V|1|B0|U|2849
4V4V|1|B0|A|2850
4V4V|1|B0|A|2851
4V4V|1|B0|G|2852
*
4V4V|1|B0|U|2865
4V4V|1|B0|U|2866
4V4V|1|B0|G|2867
4V4V|1|B0|A|2868
4V4V|1|B0|G|2869

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L17

Chain BN

50S ribosomal protein L19